PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG046875t1
Common NameTCM_046875
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family HB-other
Protein Properties Length: 390aa    MW: 42922.3 Da    PI: 7.5856
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG046875t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox19.12.2e-061374655
                      S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS
          Homeobox  6 tftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55
                      +ft++++ e+e+  ++  n+ p +e    LA+k            ++ +qV +WFqNrR+  
  Thecc1EG046875t1 13 RFTPTEVAEMETILQEhhNQMPVREILVSLAEKFsesadrkgkiVVQFKQVWNWFQNRRYAI 74
                      69999999****999777999********************9999999***********865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.56E-11476IPR009057Homeodomain-like
SMARTSM003895.7E-4781IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.5E-71380IPR009057Homeodomain-like
PROSITE profilePS500719.5881377IPR001356Homeobox domain
CDDcd000863.65E-51375No hitNo description
PfamPF167192.7E-42138265IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MGRPPSNGGP AFRFTPTEVA EMETILQEHH NQMPVREILV SLAEKFSESA DRKGKIVVQF  60
KQVWNWFQNR RYAIRAKSSK VPGKLNITSM PRDDVNPVRT VPQPVAATMP PPVTAPMPVA  120
MPASTVPGAG RPMSEHSYME FEAKSSRDGA WYDVSTFLAH RYLDTGDPEV QVRFAGFGPE  180
EDEWVNIRKH VRQRSLPCEA SECVAVLPGD LILCFQEGKD QALYFDAHVL DAQRRRHDVR  240
GCRCRFLVRY DHDQSEEIVP LRKVCRRPET DYRLQQLHAS NDSASTDQQK TSTDPSTANA  300
PKVISSSTET MLKQQNPDAF RTALVAHANV SVAAQTTNPE SKNAGTMTTN ITNPVASNPG  360
ISPSGAVFTT SIAVGTATGG FGQNMQEGI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A1e-481392694134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B1e-481392694134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A1e-481392694134SHH1 SAWADEE
4iur_B1e-481392694134SHH1 SAWADEE
4iut_A1e-481392694134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B1e-481392694134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A1e-481392694134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B1e-481392694134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A1e-481392694134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B1e-481392694134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007021609.10.0DNA binding protein, putative
SwissprotQ8RWJ71e-159SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A061FF910.0A0A061FF91_THECC; DNA binding protein, putative
STRINGGLYMA06G35561.11e-173(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73992437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.31e-137sequence-specific DNA binding transcription factors;sequence-specific DNA binding
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]